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Biomedical Computer Science and Mechatronics

Institute of Electrical and Biomedical Engineering

Here you find an overview of the scientific publications of the institute. The report period (academic year) begins on October, 1st and ends on Sepember, 30th next year:

Publications 2021/22

Journal Papers

  • D’Alessandro, S., Handler, M., Saba, R., Garnham, C., Baumgarten, D. Computer Simulation of the Electrical Stimulation of the Human Vestibular System: Effects of the Reactive Component of Impedance on Voltage Waveform and Nerve Selectivity. JARO. 2022. https://doi.org/10.1007/s10162-022-00868-w
  • Pleshkov, M. O., D'Alessandro, S., Svetlik, M. V., Starkov, D. N., Zaytsev, V. A., Handler, M., Baumgarten, D., Saba, R., van de Berg, R., Demkin, V. P., Kingma, H. Fitting the Determined Impedance in the Guinea Pig Inner Ear to Randles Circuit Using Square Error Minimization in the Range of 100 Hz to 50 kHz. Biomedical Physics & Engineering Express. 2022; 8 (2):025005. https://doi.org/10.1088/2057-1976/ac4c4a
  • Schier, P., Coene, A., Jaufenthaler, A., Baumgarten, D. Evaluating selection criteria for optimized excitation coils in magnetorelaxometry imaging. Physics in Medicine & Biology. 2021; 66:235001. https://doi.org/10.1088/1361-6560/ac36e8
  • Schier, P., Liebl, M., Steinhoff, U., Wiekhorst, F., Baumgarten, D. Experimental demonstration of improved magnetorelaxometry imaging performance using optimized coil configurations. Medical Physics. 2022; 49 (5):3361–3374. https://doi.org/10.1002/mp.15594

Preprints

 

Conference Proceedings / Bookchapters

  • Lebedev, V., Jaufenthaler, A., Middelmann, T., Baumgarten, D. Unshielded High-Bandwidth Magnetorelaxometry of Magnetic Nanoparticles with Optically Pumped Magnetometers. In: Labyt, E., Sander, T., Wakai, R. (eds.) Flexible High Performance Magnetic Field Sensors. Springer, Cham. 2022; 247-265. https://doi.org/10.1007/978-3-031-05363-4_13
  • Netzer, M., Hanser, F., Ledochowski, M., Baumgarten, D. Supervised Machine Learning for Predicting Carbohydrate Malabsorptions Using Hydrogen Breath Tests. In: Baumgarten, D., Vorwerk, J. (eds.) Proceedings of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering. Current Directions in Biomedical Engineering. DeGruyter, Berlin/Boston. 2022; 8 (2):285-288. https://doi.org/10.1515/cdbme-2022-1073
  • Ostheimer, P., Lins, A., Massow, B., Steger, B., Baumgarten, D., Augustin, M. Extraction of Eye Redness for Standardized Ocular Surface Photography. In: Antony, B., Fu, H., Lee, C.S., MacGillivray, T., Xu, Y., Zheng, Y. (eds.) Ophthalmic Medical Image Analysis. OMIA 2022. Lecture Notes in Computer Science. Springer, Cham. 2022; 13576: 193-202. https://doi.org/10.1007/978-3-031-16525-2_20
  • Schweitzer, M., Steger, B., Hoerbst, A., Augustin, M., Pfeifer, B., Hausmann, U., Baumgarten, D. Data Exchange Standards in Teleophthalmology: Current and Future Developments. In: Schreier, G., Pfeifer, B., Baumgartner, M., Hayn, D. (eds.) Studies in Health Technology and Informatics. 2022; 293:270-277. https://doi.org/10.3233/SHTI220380

Conference contributions

  • Arsalani, S., Radon, P., Liebl, M., Steinhoff, U., Schier, P., Baumgarten, D., Wiekhorst, F. Towards Magnetorelaxometry Imaging for in vivo applications. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • D’Alessandro, S., Handler, M., Saba, R., Baumgarten, D. Simulation and Evaluation of Evoked Compound Action Potentials in a 3D Model of the Human Vestibular System. Abstracts of the 45th Annual MidWinter Meeting of the Asociation for Research in Otolaryngology (ARO). Online, 2022.
  • D’Alessandro, S., Handler, M., Saba, R., Baumgarten, D. Simulation of evoked compound action potentials for the investigation of neural stimulation in a 3D model of the human vestibular system. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • D’Alessandro, S., Pleshkov, M., Handler, M., Saba, R., Baumgarten, D. Comparison of in vitro measurements and FEM simulations of guinea pig vestibular system. Proceedings of the 3rd URSI Atlantic Radio Science Meeting. Gran Canaria, Spain. 2022.
  • D’Alessandro, S., Handler, M., Saba, R., Baumgarten, D. Simulation of selective nerve branch stimulation in the vestibular system considering tissue permittivityand effects at the electrode-tissue interface. Abstracts of the 55th Annual Meeting of the German Society of Biomedical Engineering. Hannover, Germany. 2021.
  • Dong, J., Vorwerk, J., Haueisen, J., Baumgarten, D. Multi-class extension of common spatial pattern for motorimagery brain computer interfaces. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • Fischer, G., Baumgarten, D., Kofler, M. Spectral Separation of Short Latency Tibial Nerve Evoked Potentials from Cortical Background Activity - Implications for Signal-To-Noise Management. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • Fischer, G., Baumgarten, D., Kofler, M. N-Interval Fourier Transform Analysis of Cortical Evoked Responses – A Feasibility Study. 20. Tom-Wahlig-Symposium. Essen, Germany. 2021.
  • Fischer, G., Kofler, M., Baumgarten, D. N-Interval Fourier Transform Analysis of CorticalEvoked Responses – A Feasibility Study. Proceedings of the Workshop Biosignals 2022. Dresden, Germany. 2022.
  • Handler, M., D’Alessandro, S., Saba, R., Baumgarten, D. Simulation of vestibular afferent stimulation considering realistic inner ear and head anatomy. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • Handler, M., Fischer, G., Hagenbuchner, J., Luchner, B., Ausserlechner, M., Baumgarten, D. Experimental Setup for Controlled Freezing/Thawing of Tissue Samples for Evaluation of Tissue Properties and Relevant Factors for Cell Death during Cryoablation. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • Handler, M., Fischer, G., Manian, A., Pham, T., Baumgarten, D. Specific Heat Capacity Model of Saline Solutions based on the Osmotic Virial Equation verified by Differential Scanning Calorimetry Measurements. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • Jaufenthaler, A., Baumgarten, D. Low dead time, wide bandwidth optically pumped magnetometer for unshielded magnetorelaxometry of magnetic nanoparticles. 15th Photonics Workshop. Kopaonik, Poland. 2022.
  • Jaufenthaler, A., Schier, P., Baumgarten, D. Towards unshielded magnetorelaxometry imaging of magnetic nanoparticles using pulsed OPM. Workshop on Optically Pumped Magnetometers, Jena, Germany. 2021.
  • Jaufenthaler, A., Schier, P., Sander, T., Liebl, M., Wiekhorst, F., Baumgarten, D. Human-Head-Sized Quantitative Imaging of Magnetic Nanoparticles with Magnetorelaxometry and Optically Pumped Magnetometers. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • Jaufenthaler, A., Schier, P., Sander, T., Liebl, M., Wiekhorst, F., Baumgarten, D. Magnetorelaxometry imaging of magnetic nanoparticles using optically pumped magnetometers. Proceedings BIOMAG 2022 - The 22nd International Conference on Biomagnetism. Birmingham, UK. 2022.
  • Jaufenthaler, A., Schier, P., Sander, T., Liebl, M., Wiekhorst, F., Baumgarten, D. Human-Head-Sized Magnetorelaxometry Imaging of Magnetic Nanoparticles using Optically Pumped Magnetometers. Magnetic Carrier Meeting 2022. London, UK. 2021.
  • Ostheimer, P., Lins, A., Massow, B., Steger, B., Augustin, M., Baumgarten, D. Automated identification of the sclera in high-resolution ocular surface images of healthy subjects. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • Schier, P., Baumgarten, D., Kuhlmann, M.-L., Wiekhorst, F., Ankerhold, U., Liebl, M. CT Data as A-Priori Information for Multimodal Magnetorelaxometry Imaging. Joint MMM-Intermag Conference. New Orleans, USA. 2022.
  • Schier, P., Coene, A., Jaufenthaler, A., Baumgarten, D. Evaluating Optimization Approaches for Magnetorelaxometry Imaging Excitation Coil Configurations. 23rd Conference on the Computation of Electromagnetic Fields (COMPUMAG 2021), Cancun, Mexico. 2022.
  • Schier, P., Jaufenthaler, A., Liebl, M., Steinhoff, U., Wiekhorst, F., Baumgarten, D. Quantitative Imaging of Magnetic Nanoparticles in Large Body Regions using Nonlinear Magnetorelaxometry. Magnetic Carrier Meeting 2022. London, UK. 2022.
  • Schier, P., Jaufenthaler, A., Liebl, M., Steinhoff, U., Wiekhorst, F., Baumgarten, D. Nonlinear Magnetorelaxometry Enabling Quantitative Imaging of Magnetic Nanoparticles in Large Body Regions. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • Schier, P., Jaufenthaler, A., Wiekhorst, F., Baumgarten, D. Towards Quantitative Imaging of Magnetic Nanoparticles in Torso-Sized Volumes using Nonlinear Magnetorelaxometry. 11th International Conference on Fine Particle Magnetism (ICFPM 2022), Yokohama, Japan. 2022.
  • Schier, P., Liebl, M., Wiekhorst, F., Baumgarten, D. Optimizing Coil Configurations for Improved Magnetorelaxometry Imaging. Abstracts of the 55th Annual Meeting of the German Society of Biomedical Engineering. Hannover, Germany. 2021.
  • Vorwerk, J. The multipole approach for EEG/MEG forward modeling using the finite element method. „Algorithms in Biomagnetism: From Sensing, Forward Modeling, Imaging to Advanced Analytics“, Satellite Workshop to the 22nd International Conference on Biomagnetism (Biomag), Birmingham, UK. 2022.
  • Vorwerk, J., Baumgarten, D. Sensitivity of EEG forward and inverse solutions to conductivity uncertainties. Abstracts of the 2022 Joint Annual Conference of the Austrian (ÖGBMT), German (VDE DGBMT) and Swiss (SSBE) Societies for Biomedical Engineering, including the 14th Vienna International Workshop on Functional Electrical Stimulation. Innsbruck, Austria. 2022.
  • Vorwerk, J., Baumgarten, D. (2022). Sensitivity of EEG forward and inverse solutions to conductivity uncertainties. The 22nd International Conference on Biomagnetism (Biomag). Birmingham, UK.
  • Vorwerk, J., Dong, J., Haueisen, J., Baumgarten, D. Real-time source space EEG time-frequency analysis. Abstracts of the 55th Annual Meeting of the German Society of Biomedical Engineering. Hannover, Germany. 2021.

Publications 2020/2021

Publications 2019/2020

Publications 2018/2019

Publications 2017/2018

Publications 2016/2017

Publications 2015/2016

Publications 2014/2015

Older publications